YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47230640
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVKVASVLS VATSRTRQSV AVVFSAVAGT MALSYKKDLG KYKDIDEDEI LSKLSAEELR  60
   61 QLETALEEMD PENALLPAGF RQKDQTTKTP TGNFNRESLL KYLEKEAMDY KDRDDIVPFT 120
  121 GEKKGKIFVP KQKPIALHQE EATTLDPELE EALSSATDTE LCDLAAILGV HTLVTSSQTY 180
  181 DGTAAKEGFN NVIKGEKMNP VFDEPPNPTN VEETLQRIKN NDGSLTEVNL NNIKNIPIPT 240
  241 LKDYAKAMEK NTHVKKFSMA ATRSNDPVAV AFSDMLRVNK TLQSLNLESN FITGSGVQAL 300
  301 VDALRDNDTL TEIKIDNQRQ QLGTTAEMEI AKMLEENHSI IKFGYHFTQQ GPRTRAAAAI 360
  361 TKNNDLAPCP VRLALVQVCC MGVMSAGGEW KETCRDGRRR VSQLTLLHHL TVWNNFSQCP 420
  421 ALISLCGNSS LVPNRGARRA QAKATSEKKG NNWNRPLPYT RSCIVYVVVF EGVNLISFRH 480
  481 FICSHFEPFY KLSDLFTCLF FTVIPTTVTR TTFG

Type	Start	End	Confidence
Signal Peptide	1	32	0.91
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	514	0.95