YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47230522
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTEETEGF DGEASNTSMI SGASSPYQPT TEPVHSMGVW RGLRWDVEYL KSYFGILKLV  60
   61 EVVLALIGFI CIETIMMCSP CGGVYFFEFV SCSAFVVTGV LLLIFCLNLH IRVPHINWSL 120
  121 TDLINTAVST FFFFLSSLVL AFINHSTGAE IAAVVFGFLV TCVYGANTFL AIRRWRLGSG 180
  181 CQGASHSSEY IRARTASRGE MEARPEL

Type	Start	End	Confidence
Cytoplasmic	1	53	0.98
Transmembrane Helix	54	77	0.84
Non-Cytoplasmic	78	84	0.72
Transmembrane Helix	85	109	0.86
Cytoplasmic	110	122	0.78
Transmembrane Helix	123	143	0.94
Non-Cytoplasmic	144	150	0.77
Transmembrane Helix	151	171	0.94
Cytoplasmic	172	207	0.98