YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134291243, gi...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTYQIALNF EDGVTRFIDC KAGEKVLDAA FRAKINLPMD CSDGVCGTCK CRAESGRYDL  60
   61 GDDYLDDALS DDEKAAGVVL TCQMVPQSDC VIAVPASSLA CKTGHGAFAA TVAKVEPHND 120
  121 AAIVLELDVG AAAPVFLPGQ YVNIGVPGSG QHRSYSFSSA PGDAKLAFLI KKIPGGVMST 180
  181 WLETARAGDT LELDGPLGSF YLREVARPLL FLAGGTGLAP FLSMLEVLAR SGSQQQVHLV 240
  241 YGVTRDLDLV CVEALDAYAA RLPNFTFATV VADAASNHAR KGWVTQHIPA DALNDGDVDV 300
  301 YLCGPPPMVD AVRGYFDEQR VTPRSFHYEK FTPNVTAKAA

Type	Start	End	Confidence
Cytoplasmic	1	208	0.51
Transmembrane Helix	209	229	0.56
Non-Cytoplasmic	230	340	0.90