YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47230208
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLLNVLRS WLVMVSVIAM GNTVQSFRDH RFLSEKLYTG APEFVNGLQA RTFGIWTLLS  60
   61 SIIRCACAID IQNRTLYHIT LWTFVLALGH FLSEAFIYKT APLTIGVMAP LIVASFPIVG 120
  121 MLIGFQCLPD SQEDVGARQK KRN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	27	0.81
Non-Cytoplasmic	28	47	0.90
Transmembrane Helix	48	68	0.87
Cytoplasmic	69	75	0.85
Transmembrane Helix	76	98	0.86
Non-Cytoplasmic	99	104	0.78
Transmembrane Helix	105	128	0.88
Cytoplasmic	129	143	0.94