YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67547340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQSLDIKR VSATTTPPPT AREPVTGSVA KLIDVSKCIG CKACQTACME WNDLRDEVGT  60
   61 NVGVYDNPAD LSEHSWTVMR FAEYENPAGD LEWLIRKDGC MHCEDPGCLK ACPSPGAIVQ 120
  121 YNNGIVDFHE ENCIGCGYCV TGCPFNVPRI SKKDHRAYKC TLCSDRVAVG QEPACVKTCP 180
  181 TGAIVFGTKE DMKQHAAERI EDLKERGFEH AGLYDPQGVG GTHVMYVLHH ADKPSLYHGL 240
  241 PDNPSISPMV KLWKGIAKPL AVAGLALTAL AGFFHYTRVG PNEVSDDEEA AARDEARRIK 300
  301 EDAK

Type	Start	End	Confidence
Cytoplasmic	1	254	0.62
Transmembrane Helix	255	275	0.62
Non-Cytoplasmic	276	304	0.92