YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47229726
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGFLEISA GSTLTRASHE SVLLVALIRQ PCPLSQHLSQ RPSFPHRLLS QAAVGTEQPG  60
   61 PSGVSAVLQV NIQLPSPSLD HSLHAGTVLQ HLYRLELGLV WNSSDICRPC LRALSSQIMW 120
  121 TMLGMTTLPH IGGFLGGLIT RSEVKTWYTT IRKPSWRPPN AAFPVVWTCL YTGMGYGSYL 180
  181 VYKELGGLTE DAVVPLGLYG LQLALNWAWT PIFFGAHKLK WALVEIVFLT GTVGATMVSW 240
  241 YPISRTATLL LAPYLSWLCL ATALNYCIWR DNPEKKDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	117	0.78
Transmembrane Helix	118	140	0.87
Cytoplasmic	141	159	0.83
Transmembrane Helix	160	180	0.88
Non-Cytoplasmic	181	191	0.80
Transmembrane Helix	192	213	0.83
Cytoplasmic	214	220	0.78
Transmembrane Helix	221	243	0.88
Non-Cytoplasmic	244	249	0.75
Transmembrane Helix	250	269	0.93
Cytoplasmic	270	278	0.93