YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47229556
Protein type:	Globular with Signal Peptide
Type Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTFWTAIP LFLGLHSFAR GYGRRLGFQT TPPPLHPSPS LQEGETQVQQ REERGERKRW  60
   61 TSEFKKSQER EQVQNKREQD GEAEDRRSWR GRQQQDRWRR CIIVGEERGE FSLAGTTIPA 120
  121 KGEEDFLTLA ASRLSRKKRV IGAGVGVAMV LVLLVAIPLL VHTTKGGGAG GGGMHYEMLG 180
  181 SCKMVCDTFT PPQGELTAVS PQPPDFPNRR GKQGFRGSPG LPGPPGPKGP PGEPGKPGPP 240
  241 GPPGPGPGGY GSSLYSPKIA FYAGLRKQHE GSEILKFDDV VTNVGNYYEP STGKFTCPLP 300
  301 GIYYFTYHVL MRGGDGTSMW ADLKKNGQVR ASAIAQDADQ NYDYASNSVI LHLDVGDEVC 360
  361 VQLDGGKVHG GNTNKYSTFS GFLIYPD

Type	Start	End	Confidence
Signal Peptide	1	19	0.54
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	387	0.61