YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67548488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAFPKLGAI WVYLAATPLL GLTITLIAYL IAQAVYARSR FNPLANPVLI AVALIVGLLT  60
   61 VTHTPYPTYF EGAQFVHFLL GPATVALALP LYRQWSKLRR AALPLLVGLL AGSLTAIVSA 120
  121 VGVAALFGAS HQTIASLAPK SATTPIAMAV AQQIGGIPSL TAVLVISTGI FGAVCARAIL 180
  181 NVLRIDEPAV RGFALGVASH GIGTARAFQI GEETGAFAGL GMGLNGVLTA FIVPILLPVL 240
  241 SRWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.89
Cytoplasmic	33	43	0.81
Transmembrane Helix	44	64	0.92
Non-Cytoplasmic	65	72	0.82
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	104	0.77
Transmembrane Helix	105	127	0.94
Non-Cytoplasmic	128	156	0.89
Transmembrane Helix	157	180	0.87
Cytoplasmic	181	188	0.91
Transmembrane Helix	189	210	0.87
Non-Cytoplasmic	211	215	0.88
Transmembrane Helix	216	240	0.89
Cytoplasmic	241	244	0.88