YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134137327, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHDFLRHAA RFAPVLILGL FPALACAQAA GLPAFNTSPG PNGGTTYSLS VQTMLLLTML  60
   61 SFLPAMLLMM TSFTRIIIVL SLLRQALGTA TTPPNQVLLG LAMFLTFFVM SPVLDKAYND 120
  121 GYKPFSDGSL PMEQAVQRGV APFKGFMLKQ TRETDLALFA KISKAAPMQG PEDVPLSLLV 180
  181 PAFVTSELKT GFQIGFTIFI PFLIIDLVVA SVLMSMGMMM VSPSTVSLPF KLMLFVLVDG 240
  241 WQLLIGSLAQ SFT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	32	0.88
Non-Cytoplasmic	33	53	0.85
Transmembrane Helix	54	77	0.85
Cytoplasmic	78	94	0.74
Transmembrane Helix	95	114	0.80
Non-Cytoplasmic	115	193	0.89
Transmembrane Helix	194	217	0.84
Cytoplasmic	218	227	0.69
Transmembrane Helix	228	249	0.79
Non-Cytoplasmic	250	253	0.70