YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47229152
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASGALFPS MVSGSRGSSS KYLVEFRAGK MTMKGSTVTP DKRKGQVYIQ QTDDSLIHFC  60
   61 WKDRTTGNVD DDLIIFPDDC EFKRVNQCTT GRVYVLKFKA GSKRLFFWMQ EPKTDKDEEF 120
  121 CRKVNEYLNN PPIPGALGSG GGGHELSALG GEGGLQNLLG NMSHNQLMQL IGPTGLGGIG 180
  181 GLGALAGPGL ANLLGGGGSS VPAASISSTS PSTAATPTST SAASRVSSSQ VPTTPITPSA 240
  241 TSTASPTATT PSTPAPSSQA AAAAASPAQP IQLRDLQSIL ATMNVPSSGQ GVDLTSVLTP 300
  301 DVMAPILANP EVQQRLMPYL PSGESLPQSS EELSNTLSSP QFQQAMSMFS SALASGQLGP 360
  361 LMNQFGLPAE AVDAANKGDV EAFAKAMETE TKSDQDGDAK DKKDEDEDMS LD

Type	Start	End	Confidence
Signal Peptide	1	17	0.73
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	412	0.86