YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47228433
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHVIVTCRS MLWTLLSIVA AFGELIAFMS TDWLVGYPRT PDAVFGRHGA TAAGEAYRPT  60
   61 LGIYGRCIKL PHLQRGILCG PYAIHFGEIA SGFWQATSIF LAAGILLLCA VAFISVFTMC 120
  121 FQSIMKKSIF NVCGLLQGIA GLFLILGLML YPAGWGSEKV QLYCGQDAAP YRTGLCSMGW 180
  181 AFYTAMGGTV LTFICAVFSA QAEIATSSDK VQEEIEEGKS LICLL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	31	0.90
Non-Cytoplasmic	32	98	0.92
Transmembrane Helix	99	121	0.91
Cytoplasmic	122	128	0.91
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	178	0.92
Transmembrane Helix	179	200	0.91
Cytoplasmic	201	225	0.96