YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68009491, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLTGTLVNT GLIIIGTLLG LLFHKIPERT KETVVQAIGL AVVVLGVQMG LKSENFLIVI  60
   61 GSLVLGGAIG EWLRIDEKLN RVGEWLELKI GRGHPSNIAE GFVTATLIFV IGAMGVLGAL 120
  121 DGGLRQDHDV LYTKGLIDGF TALVLSSTLG IGVIFSAIPV LVYQGAIALS AVAITQFVPD 180
  181 AILQQFIVEM TATGGVMILA IGLNLAGITK IRVANLLPGI VMVALIVTGL ELLGFN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	24	0.92
Cytoplasmic	25	32	0.76
Transmembrane Helix	33	51	0.84
Non-Cytoplasmic	52	55	0.71
Transmembrane Helix	56	75	0.78
Cytoplasmic	76	95	0.64
Transmembrane Helix	96	120	0.83
Non-Cytoplasmic	121	134	0.57
Transmembrane Helix	135	158	0.77
Cytoplasmic	159	159	0.39
Transmembrane Helix	160	178	0.63
Non-Cytoplasmic	179	185	0.58
Transmembrane Helix	186	207	0.89
Cytoplasmic	208	213	0.68
Transmembrane Helix	214	235	0.90
Non-Cytoplasmic	236	236	0.83