YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|171990241, gi...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTRTKIGLG VIGSGMLAAS YYFYEMAIAT NPKPFLSNNR DLSDEMVRLM QPGQTWIKEQ  60
   61 PLELIEVKAH DGLMLRGHYL PPLVPSDRIV ILVHGYGGVG TDLAGFAYLY HQAGFHVMMP 120
  121 DNRGHGKSDG NYIGFGWHDR EDCLRWTEYL VARLGRESAI FLHGVSMGGA TVLMTSGELL 180
  181 PPQIKGIISD CAYTSVNAVL AYQMKRMYRL PHFPFLTMTS ILTKLKAGYF FSEASAIKQV 240
  241 QRATVPILFI HGEADTFVPT SMVYELYQAC PTEKELVVIP NAAHAMAYFE DPDTYDTVVE 300
  301 RFVRRILDEP TEKV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.66
Transmembrane Helix	7	28	0.61
Non-Cytoplasmic	29	314	0.72