YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68009824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.67
Transmembrane Helix	5	23	0.89
Cytoplasmic	24	38	0.55
Transmembrane Helix	39	58	0.61
Non-Cytoplasmic	59	65	0.68
Transmembrane Helix	66	90	0.85
Cytoplasmic	91	119	0.98
Transmembrane Helix	120	142	0.88
Non-Cytoplasmic	143	158	0.85
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	187	0.75
Transmembrane Helix	188	209	0.89
Non-Cytoplasmic	210	229	0.91
Transmembrane Helix	230	252	0.90
Cytoplasmic	253	269	0.94
Transmembrane Helix	270	293	0.91
Non-Cytoplasmic	294	317	0.90
Transmembrane Helix	318	342	0.81
Cytoplasmic	343	364	0.93
Transmembrane Helix	365	384	0.96
Non-Cytoplasmic	385	393	0.74
Transmembrane Helix	394	415	0.92
Cytoplasmic	416	421	0.92
Transmembrane Helix	422	441	0.93
Non-Cytoplasmic	442	448	0.76
Transmembrane Helix	449	467	0.84
Cytoplasmic	468	490	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQEWISISL YLVMMLAIGY IAYKRTTNTE DYMLGGRDLG PGVTALSAGA SDMSGWMLMG  60
   61 LPGAMYATGV SALWLALGLL IGCYVNYLIL APRFRLYTEM ANDSITIPDF LENRFKDTSC 120
  121 VLRTVSAVVI IVFFTFYTSA GIVSGGKLFE SSFGFDYHYG MLLTIAVVVA YTLFGGFLAV 180
  181 SWTDFVQGCI MFIALVLVPV VALTDVGGID GAYSYAENLD PTLFDPLKGT TFLGIIGFLA 240
  241 WGLGYFGQPH IIVRFMAIRS VKDLKNARRI GIGWMFISIL GAMMTGLVGI ACFKGQGNGL 300
  301 GDPETVFIRF SDVLFHPYIT GFLMAAILAA IMSTISSQLL VTSSALTEDF YKTFLNKKAT 360
  361 DKQLVLTGRI AVLVIAVIGS ILAWNPSATI LSLVGYAWAG FGSAFGPIIL LSLYWKRMTK 420
  421 QGALAGMLSG AITVIAWVQL GLSDTLYEMV PGFFTSLLFT VVVSLLTKQP VESVQDTFDD 480
  481 MEEELKEAIE