YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46113643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKRYTIRRR IWITIWFTSV FSAVLFVLLT FYLYDRFYLQ TQEDLLLNRG EKLINIYESE  60
   61 GLSGAFYDGM TYTNELTESK VFFIDFLKKN PAGLRFLTNA DIEQLRNGET VVSSRTHPIE 120
  121 GTDILMTGFP IIENNRLVGT LILYLELGQI SEPFRPLRLM IFFMIGLIVL NLVIFGRQII 180
  181 DTIIRPLIDM KRASTVYAQG DFAYRIPIQS DDEIGELAET LNKMAESLGE VDEQRKEFLA 240
  241 NVSHELRTPL SYIRGYTEMM QDKALDEKTR DQYYQIIERE TERLQRLVND LLDLAQLERD 300
  301 SYPMTKQPLV FSQVLEDVVY RMEPIAKAKG VSIITDFDPS QIVLGDNDRL EQVIGNLLDN 360
  361 ALRYTPASKH IYLSTKTDGE QTICSIRDEG EGIPPEHLER LTKRFYRVDK SRTRKDGGTG 420
  421 LGLAITKHII DRHDGTISFE SVLGQGTTVL ITLPLLPDED DGFS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	33	0.95
Non-Cytoplasmic	34	158	0.93
Transmembrane Helix	159	180	0.81
Cytoplasmic	181	464	0.72