YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|172056893, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.53
Transmembrane Helix	8	27	0.93
Non-Cytoplasmic	28	49	0.53
Transmembrane Helix	50	77	0.80
Cytoplasmic	78	85	0.43
Transmembrane Helix	86	107	0.81
Non-Cytoplasmic	108	111	0.47
Transmembrane Helix	112	128	0.84
Cytoplasmic	129	134	0.51
Transmembrane Helix	135	157	0.87
Non-Cytoplasmic	158	176	0.54
Transmembrane Helix	177	200	0.84
Cytoplasmic	201	216	0.50
Transmembrane Helix	217	240	0.82
Non-Cytoplasmic	241	247	0.41
Transmembrane Helix	248	272	0.86
Cytoplasmic	273	283	0.46
Transmembrane Helix	284	308	0.69
Non-Cytoplasmic	309	546	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYDLQEMIF TFIGGLGIFL FGIKYMGDGL QKTAGDRLRY ILDKYTSNPF LGILAGIVVT  60
   61 VLIQSSSGTT VIVVGLVSAG LMNLRQAIGV VMGANIGTTI TAFIIGFNVK EAALPAIALG 120
  121 AFLIFFFNKE RIQYIGQIFF GFGALFYGLT LMGDGMAPLE SSEWFRDLTV SMSDSPLLGV 180
  181 FVGTVFTMLV QSSSATIGIL QELYDGGMID IKAALPVLFG DNIGTTITAV LAALGASIAA 240
  241 KRTAAAHVIF NIVGTVIFLL ALPLFSSFIT WITGALDLEP KMQIAFAHGT FNVVNTLIQC 300
  301 WFIAQIAWLV QKVVPGTDTT VDSKPRHLDQ NILNQSSSLA LSQAKLEVLR MGEFSKDALE 360
  361 KAHRYTQSHD KKDVSDAGQI EYAINHLNTE VTSYLVKVAA HDLSERESND HSLLMHAVND 420
  421 FERIGDHVEN VIELVDFQIV NRITFTEKAK KELDEMYILT QKIVETAIKA VELDDVSLAR 480
  481 RVLELEGKLD SLERSFRKHH VLRVNAGECT GQAGMIFVDL LSNLERIGDH AVNITDLVLE 540
  541 QRSGTA