YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45531859, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLIQLFVA IFLISGIILF ALNRLNTTQG YSGKNVLNIY NWGDYIDPEL IDQFEKESGI  60
   61 KVVYQTFDSN EAMLTKIEQG GTTYDIAVPS DYAIAKMIEE DLVLPIDQQK IPNLKNIDPR 120
  121 FLDLSFDPGN KYSIPYFWGT VGIVYNQKLI DGKKPTSWKD IWDPALKNQI LLADGAREVM 180
  181 GMSLNSLGYS LNETDETKLQ EAKANLMDLT PNVKAIVGDE IKLLLANEEA GIGVVWSGDA 240
  241 NEIMSENENL NYVIPKEGSN VWFDNVVIPK TAKNVKGAHE FINFMLDPKN AAKNADYVGY 300
  301 STPNKAALKL LDRDVREDKR FYPDKEVTDT LEVYENLGKE MLAHYNELFL EFKMHKK

Type	Start	End	Confidence
Signal Peptide	1	21	0.87
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	357	0.98