YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47227215
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STMSEQAISF AKDFLAGGIS AAISKTAVAP IERVKLLLQV QHASKQITAD KQYKGIIDCV  60
   61 VRIPKEQGFL SFWRGNLANV IRYFPTQALN FAFKDKYKKI FLDGVDKRTQ FWRYFAGNLA 120
  121 SGGAAGATSL CFVYPLDFAR TRLAADVGKA GAEREFNGLG DCLVKIFKSD GLRGLYQGFN 180
  181 VSVQGIIIYR AAYFGIYDTA KGMLPDPKNT HILVSWMIAQ TVTAVAGLTS YPFDTVRRRM 240
  241 MMQSGRKGEI MYTGTIDCWR KIARDEGSKA FFKGAWSNVL RGMGGAFVLV LYDELKKVI

Type	Start	End	Confidence
Cytoplasmic	1	113	0.73
Transmembrane Helix	114	136	0.60
Non-Cytoplasmic	137	211	0.62
Transmembrane Helix	212	233	0.87
Cytoplasmic	234	299	0.78