YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|172058915, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.98
Transmembrane Helix	114	135	0.93
Non-Cytoplasmic	136	145	0.81
Transmembrane Helix	146	168	0.89
Cytoplasmic	169	175	0.80
Transmembrane Helix	176	194	0.92
Non-Cytoplasmic	195	215	0.82
Transmembrane Helix	216	234	0.95
Cytoplasmic	235	249	0.92
Transmembrane Helix	250	273	0.88
Non-Cytoplasmic	274	290	0.82
Transmembrane Helix	291	312	0.90
Cytoplasmic	313	331	0.88
Transmembrane Helix	332	354	0.90
Non-Cytoplasmic	355	361	0.87
Transmembrane Helix	362	383	0.91
Cytoplasmic	384	390	0.82
Transmembrane Helix	391	412	0.88
Non-Cytoplasmic	413	433	0.77
Transmembrane Helix	434	456	0.90
Cytoplasmic	457	470	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKQTAARV LELVGGRENI ITAAHCATRL RLVLHDESKV DQAALEDLDG VSGAFSSSGQ  60
   61 YQIIFGTGTV NKVFAEFAPL AGVKLDGEEP LDVKKAASQK LNPFARLARS LSNVFVPLIP 120
  121 AIVAAGLLMG LLGMIKAFGW VSGDSAIVQL LDMFSSSAFI ILPILIGFSA AREFGANPYL 180
  181 GAVIGGIMTH PSLLNPWTLG NSEPEVMHFL GMNIELIGYQ GTVFPVLLTV WVMAKIEQQV 240
  241 RKRTPETLDL LVTPFVTILV TGFLALIVIG PIGTLLGKGI SFVLVFFYEQ FSVVAGLLFG 300
  301 GLYSTIVITG MHHSFHAIEA GLLADKSIGK NFLLPIWSMA NVAQGGAGLA VYFMTKNVKL 360
  361 KALALPSAFS AFLGITEPVI YGVNLRLGKP FIGGAIGGAI GGGYVVLTQV AANAYGLTGI 420
  421 PMIAIVAPLG ASNLINYLVG FAIAVATAFV STVILMRLDV RKQKQTDLAA