YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47226565
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFSHQVLL AVTRSRGSYL LSKRHNCCSV SSKAYLHIDP PGQKSPFLPR RHSRYVYPHC  60
   61 YRGHAISRGH NSALLARSLH NSGVWFQNIK DGDSKATPPP TQESTSGIKT DSDTPQSDPP 120
  121 PAPATASTTS TPAVAPVQER AVIKKSLYQR VVDELKHYYN GFRLLGIDIK IAGRMVWRLL 180
  181 HGQVLTRRER RRLMRTCADL FRLVPFMVFV IVPFMEFLLP VFLKLFPEML PSTFETETKK 240
  241 EEKQKKGLAA KLELAKFLQE TIAEMARRNK AKAQTEDETQ RFSTFVQKVR GTGEQPTTKD 300
  301 IVRFSKLFED ELTLEHLERP QLVALCKLLE LQPIGTNNLL RFQLMMKLRT IKSDDEMIAA 360
  361 EGVAAMSVSE LQAACRTRGM RSLGLTTEQL RLQMQQWLDL HLKENVPPSL LLLSRAMYLT 420
  421 DLKPKAPIIP P

Type	Start	End	Confidence
Cytoplasmic	1	199	0.94
Transmembrane Helix	200	222	0.88
Non-Cytoplasmic	223	431	0.98