YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47225500
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPLSTRGP LLFLAPDNRP FPSHLTRTCR ARPCSEAPLP EVSLLPEASR FLHRLLLAPL  60
   61 EPYGPGGPGA YGPGGPGAYG SGFGPGGPGA FGPGGPGAFD GINPQGGPGY GPNPSSPYFA 120
  121 PGQSGNFHDN VYHSEEDPPP FHENQDFDFG FDDKSVRRAF IRKVFLVLSA QLLVTFAFVA 180
  181 VFTFVNEVKE FVRVNTWTYF VSYAVFFVSV CVISCCGNLR RKHPWNLVAL SVLTLSMSYM 240
  241 VGMIASFHDT DSVVMAVGIT AVVCFTVVLF SLQTKYDFTS CYGVLFVCLI VLIIFGLLCI 300
  301 FIRNQILQIV YAGLGALLFT CFLAVDTQLL LGNKQLALSP EEYVFAALNL YTDIINIFLY 360
  361 ILAIIGKAKG

Type	Start	End	Confidence
Cytoplasmic	1	163	0.98
Transmembrane Helix	164	185	0.94
Non-Cytoplasmic	186	196	0.90
Transmembrane Helix	197	217	0.93
Cytoplasmic	218	224	0.82
Transmembrane Helix	225	246	0.91
Non-Cytoplasmic	247	252	0.80
Transmembrane Helix	253	272	0.93
Cytoplasmic	273	280	0.79
Transmembrane Helix	281	302	0.94
Non-Cytoplasmic	303	308	0.79
Transmembrane Helix	309	331	0.88
Cytoplasmic	332	342	0.89
Transmembrane Helix	343	365	0.76
Non-Cytoplasmic	366	370	0.67