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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47224917
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIVRLTSV CRSGVRPLFH HSPLLARPLA APRRHQDQPY LPTAQIHASQ ALPASSGSKA  60
   61 ASLHWTAERA LSVLLLALGP AAYCSPGPVV DFSLAAALTL HGHWFNHWFD GMALLHQFKI 120
  121 ASGQVTYKSR FLASDSYQSN TENNRITVSE FGTVTLPDPC RNFFQRFLSR FELPKPTDNA 180
  181 NVSVVTYKGN YYVSTETKII HKLDPEKLET TQKVDWSKFI AVNGATAHPH TEPDGTTYNM 240
  241 GNSYTSKGAY YNIIRVPAAK KREEETLEGA TVLCTIPSSD KTKPSYYHSF AMTENYVVFV 300
  301 EQPIRMDLFK IVTGKLRGRS ISDGFLWNPK RNTVFHLVDK RTGEVSSVKY LAKALSTFHQ 360
  361 INAYEDDGFL VLDMCASDDG LAIANYNLQN LRKSGEALDE VYNTLCRVFP RRFVLPLHVD 420
  421 GATAYNQNLN ARHSSTATAV RTGRNKVGGE TGGGGGAGPT ALLSAGLLHP RGPPRRGPPP 480
  481 LRRPGVPSDP LPPLQRAALP LLLRLRLQTP GGRLADQDGR RQQEHEGDPP AGPPLRTTSP 540
  541 LLLFSSSSEV WEQAGFYPSE PVFVPAPNAR AEDDGVVLSV VVTPDKLRLK NSAVASGCRR 600
  601 DVQSRARRWP GPVGTSRLSK RTPEGGPGSP KAGFKHPEGR MGGFGWKRCT WDALRSCDQP 660
  661 GDGAAANLND SHNQMVVHWA GEKSNVIVAL ARDSTGSTGP KSSSVYVSYD YGASFTQVSD 720
  721 KFRPPADGTG AEDTPVISQF YHSPADNKRY LFVDSGSRVL WSSLDFCRSV RSFRLPFRPS 780
  781 DLLLHSRRPN LVLGYDAAHP SKQLWKSDDF GETWVLIQEH VKTYFWGVEP YDPPTTVLVQ 840
  841 RSEPQGVSTV LSSTDFFQSQ RNRRVILERA DSFQLRDRYL FATTTQKLPG SQEPSSVQLW 900
  901 VSYNRQPMRA AQFMTRHPIT VSSQPGGGAC LQEYYIADAS EDQVFVCVNH LNNVTHLYIS 960
  961 DAQGLSFSLS LEDVLYYSPE GSGSNTLIRY FASEPFADLH RVEGLRGVFI ATLVNGSASE1020
 1021 DNMRSVITFD KGGTWELLQA PTADSLGGTM DCQLSQGCSL HLAQRWSQLF NIQLRRMPIL1080
 1081 SKDSAPGLIM ATGSVGRSLA NKPNVYVSSS AGARWREVST RAGWPPLLHV GRPRRASDGR1140
 1141 PPGRRHHTSQ VGPAGGKAEP PSLRPCLKAF STNEGETWTD FRFSQREVLV YQLLTEPGEK1200
 1201 SAVFTVFGSY ADQRHSWLIL QVNASDVLGR TPALLATGAA IFPGLTLALV SPPPAPPGVP1260
 1261 CSEADYKRWS PSDEHGNGCL LGREVTFKRR APHATCFNGE EFDRPVGVSN CSCTRQDYEC1320
 1321 DYGFKLSEDL SLQVCVPDPE FTGDLDAPPL PCPVGSAYRR SKGYRKVPGD SCSGGDVESR1380
 1381 LDGEMLPCPV GGEGLRLGGV KESTEFILYA VRNAVHRYDL ATGQDQPLPL GGLREAVALD1440
 1441 FDYDRNCLYW ADISLDTIQV SVGGAWSGAG AASRLSRCVG APQRLCLNGS SGQEVVVRKD1500
 1501 LQNVEALAFD PVSRLLYWVD AGARRIEVTP EEERPPVAVV TEADATLLFK GVQLGGRHAP1560
 1561 HSAQRLRPGA PQGAGADPWR ESDVLDRLGR PSGRGLPRLH GRNQRVLHRL GRRPLAQRHH1620
 1621 GGRALALLDR SLQRPHREGR LHRRAQERAA GGAASPVRHR CLQGERDIAG GLLGAGLTGL1680
 1681 SVVQGELYWD DWSKMGIFKA PKAGSQSGEL LVGGLTGVMD LKIFYRGKNR GESGGEGCGL1740
 1741 RGAPFDLRAC LTRSPSGHNA CVDQPCSHLC LPRPAHRHTC VCPDGAPSAA TAPSGELQCQ1800
 1801 CPSGYRLQNK TCVKTEHSCL PNQYRCSNGR CISSIWKCDS DNDCGDMSDE QECPTTTCDP1860
 1861 SNQFRCVASG SCVPLAFKCD HEDDCGDNSD EEHCESHQCG PGEFTCARGV CVREAWRCDG1920
 1921 DNDCRDWSDE ANCTAGHHTC EANSFQCHTG HCIPQRWMCD GDDDCQDGSD EELRYCEGPQ1980
 1981 CHGFLCSNHT CLPATAHCNG VQECPDGADE QNCEPLCTRY MEFVCRNRAQ CLFRSLVCDG2040
 2041 IKHCEDGSDE DAEYAGCAVP SEFGKVCDAY TFQCANGVCV SLEWKCDGMD DCGDYSDEAN2100
 2101 CGREPRQRHR RRAQPARSSD AAQSVAAAPT DVPGCSRYFQ YECKNGRCIP TWWKCDGEND2160
 2161 CGDWSDETQC TGGATPHTAA PGPSTCAPNR FRCGSGACVV DSWVCDGYAD CPDGSDELGC2220
 2221 PTGNPAHPPA VRRSEPLLTP DLLQPTARRR RRPRRSPRCP PGLRTAAAGA SSCAAGPLSA2280
 2281 SRTGSAATAG PTAGTARTRP AAPPGGLCSA PTAPAAPTAR PACRTASGAT ASWTAPTAAT2340
 2341 RTTAPVGPTN PPRRRHPPRH NSGSPPGETQ TFKVQNLQWT PDFSGAVTLT WSRPKNLPLD2400
 2401 SCSFLVYYRC DPIGAVRASR QLASRRVSVP RLVGTQQWTT MDTHSNKATY RLTVLQPDTT2460
 2461 YQVKVLTQCL SRTHKSNELI TLRTPEGLPD PPRNLQLSCD RGEDGKVDVS WSPPDKTHGL2520
 2521 IREYIVEFSE KGGLEWTSHR CSATQLEVKD LQPDTLYRFR VAAVTSRGVG NWSEVKSITP2580
 2581 IKALPPPSRG GGCHRHRLHE PLLQLQLPVR GPAVRGDPVL AVRLPRQREQ ELHGGGEVPQ2640
 2641 RLQLTAGTVY EVAVWARTAI GDSPTALSHH RTGGVQPQRP LLKSRPLNQT AVECSWTAGG2700
 2701 ATVQTYGVFY ATSFLDLYRS PRQLSAASLS LTVVVDSPEQ YLFLVRATAP FLGPPSELSV2760
 2761 VKMIPNARCR PGTSNRVRAE KMQALLKWQP PYDSPDEPLM YAIHVRDAVR KTERDYKVTT2820
 2821 QNNTVEYLLR GLEPGGRYSV SVRLRNMSKE ASFSLSTVPL PAPEALKILT EDDHVFLFWK2880
 2881 SLAVREKGFD EARGYEVHVY DSTTNQTSYL GNTTETYLRV SSLQPGHNYT FSVQARCLVG2940
 2941 GQLCGEAALL LYDQLTAEGG DAAGSGQRSG DMAAVVVPVL FMLLLGVCGG LVILYLRHRR3000
 3001 LQNNFTAFAN SHYNSRLGSA IFSSGDELGD DDEDAPMISG FSDDVPMVIA 

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