YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13957539
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERIRYVFL AIFCALLCKE SIDIWMMNNG DFDRAITPFM NGIRQFSHDG TLLYTLKENF  60
   61 SSIVNYEYKS SFSYILYLYA YVISIFTHTF DLRLWSSLSK IVYICALYKL FVEINNKKYS 120
  121 YLLFPVSALL LFTPSILSQF TAFYQDQIVI TLLPVITYII LKKEISRFDK VLLVACAALI 180
  181 ATSKSQFFYI PILISLISII FIDIRDKKFH LAMVIATIIA LSFSFFSPSA TKNNSYHSLY 240
  241 FGTLLYNKSN GKENPSWAVD ECIGVDAWGN KFDLDKGAVT TEDAGACFAK NKERGLKDSL 300
  301 LLMLKQPSMF LLLPFDSGVR TQLTEDYFHV FKENKLIISK SVFLNEVQKI KDSALSTVRI 360
  361 PVAFIAMIAS LIFIRKKYSV AIFTLSAFSI SQFYISFIGE GYRDLDKHLF AMNFSFDLMI 420
  421 FIVLSIILDK VASGIYK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	27	0.73
Non-Cytoplasmic	28	72	0.83
Transmembrane Helix	73	92	0.75
Cytoplasmic	93	118	0.78
Transmembrane Helix	119	137	0.90
Non-Cytoplasmic	138	142	0.62
Transmembrane Helix	143	161	0.75
Cytoplasmic	162	179	0.60
Transmembrane Helix	180	202	0.74
Non-Cytoplasmic	203	208	0.70
Transmembrane Helix	209	229	0.90
Cytoplasmic	230	377	0.76
Transmembrane Helix	378	398	0.87
Non-Cytoplasmic	399	408	0.53
Transmembrane Helix	409	428	0.90
Cytoplasmic	429	437	0.47