YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197305090, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKEVCSVA FLKAVFAEFL ATLIFVFFGL GSALKWPSAL PTILQIALAF GLAIGTLAQA  60
   61 LGPVSGGHIN PAITLALLVG NQISLLRAFF YVAAQLVGAI AGAGILYGVA PLNARGNLAV 120
  121 NALNNNTTQG QAMVVELILT FQLALCIFAS TDSRRTSPVG SPALSIGLSV TLGHLVGIYF 180
  181 TGCSMNPARS FGPAVVMNRF SPAHWVFWVG PIVGAVLAAI LYFYLLFPNS LSLSERVAII 240
  241 KGTYEPDEDW EEQREERKKT MELTTR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	31	0.87
Non-Cytoplasmic	32	42	0.70
Transmembrane Helix	43	67	0.80
Cytoplasmic	68	87	0.72
Transmembrane Helix	88	110	0.90
Non-Cytoplasmic	111	129	0.87
Transmembrane Helix	130	151	0.86
Cytoplasmic	152	160	0.77
Transmembrane Helix	161	183	0.87
Non-Cytoplasmic	184	203	0.85
Transmembrane Helix	204	226	0.94
Cytoplasmic	227	266	0.88