YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47222942
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNPDSNGD KADGSSVTHF RSYLHGGMSS LLTTVPTIVV FPVYKTVFRQ QTNNSSICQA  60
   61 LRQMKKEGLP KLYRGVVPPI LQRTLTGTVL FGVQDTFHHQ LSLLNVFPRP ALPALAGLGT 120
  121 GVVEALVLTP FERVQNLLQN NQNDRKLPNI RRVLAELNKQ GPALGFYRAF LPTAVRNALG 180
  181 STLYFGLKGP IYDAVHAQGL PPLVASFASG TLASWPITFV VFPMSVLVAN MQKHVEGEAK 240
  241 SAMACWGILW KDRQRKHYTD TSHLLRRPTL HTPAPDQSQK SARMSDNPVK QEVENFNRRS 300
  301 LKKTETKMNT SLPTKEDIEQ EKQAQKEQK

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.48
Transmembrane Helix	23	44	0.52
Cytoplasmic	45	110	0.51
Transmembrane Helix	111	128	0.41
Non-Cytoplasmic	129	206	0.53
Transmembrane Helix	207	228	0.60
Cytoplasmic	229	329	0.68