YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47221837
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCKCPKRK VTNLFCFEHR VNVCEHCLVS NHNKCIVQSY LQWLQDSDYN PNCSLCNDPL  60
   61 TAQDTVRLVC YDVFHWSCLN NLASRLPLHT APAGYQCPVC QGPVFPSPNL ASPIADQLRE 120
  121 QLSSVNWARA GLGLPLVEES IVAHEETAVN DVTDYTDWST YEAQDQSHIY PSHSYNTNDS 180
  181 PAPPVTAPQQ EDYAGPRKNG TQEHSVVNFP TSASDTITIH SASSPRKLYD TRDASHSSVT 240
  241 QIDFDDDKYR RRPALSWFAQ ILKNRTGGKR TSLPWKQRVF MFLLVGVLGF FTLIIIMAKL 300
  301 GRASAGSDPN LDPLLNPNIR VGK

Type	Start	End	Confidence
Cytoplasmic	1	278	0.66
Transmembrane Helix	279	301	0.90
Non-Cytoplasmic	302	323	0.65