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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47221276
Protein type: Globular with Signal Peptide
Type Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVAVCFVVS MLFCGIDTAG RYEPNWKSID SRPLPEWYDQ AKFGIFIHWG VFSVPSFGSE  60
   61 WFWWFWEKEK VKPYVEFMQK NYPPDFKYQD FAPQFTAEFF DAKEWTEILA SSGAKYVVLT 120
  121 TKHHEGFTLW GSKNSWNWNA VDVGPKRDLV DEVVTAVRAK GDLRVGLYHS LFEWFNPLYK 180
  181 TDAANVFTTN YFPTLKTLPE LYELVLKYKP EVLWSDGDGD APDTYWNSTG FLAWLYNDSP 240
  241 VRDTVVTNDR WGYGSICAHG GYYTCSDRYL PGHLLKHKWE NCMTIDKRSW GYRRNAPLSD 300
  301 YLTIEQLIAT LVETVSLGGN LLMNIGPTHD GRIAPIYEER LRQMGSWLKV NGEAIFNTTA 360
  361 WRAQNDSVTP DLWYTFSPQG KSIFAVLLDW PVNGSVVLSE PVVTQGQTQV ELLGHGSVRW 420
  421 GPLKPHGLQV LLPQLSFRQM PCQWAWTLKL TGTAAIMAVD QHSPVQPTSH QEYEASSNPP 480
  481 QTAKAFAAGR GKAAAASSLG PSSHIRSTSS PHLQPQGPHS GMDQLAEAVV KAEQKLQKPG 540
  541 KYVCDYCGRA CAKPSVLKKH IRSHTGERPY PCVPCGFSFK TKSNLYKHRK SHAHSVKAGA 600
  601 VPLSELGSCN AGADQGSFEG EGELFSDAEQ STDTDEDALN DPLLLLDSPV EGSDNTAVKV 660
  661 LNLIAQKKGA APVSAQDGSS QTQEINAPPA AAEASRAIQS CTIKQRLALR LSEKRSGDSE 720
  721 HNLSLPSQSS KGSTDSGYFS RSESTEHQAG PPNTNAKSYQ EIMFGKCYRP SPKQTAAFMA 780
  781 GRADSSEYSG RRSEKGVSRV FTQENDTAES IKINTKSFAR EEATEALLDA GSDAGTLIRS 840
  841 NSMPTSSATC LTMPQALRGS HSFDERTSSG SMRRLRRQAA FELSAHEGHA DADAHGKISE 900
  901 TAISPSGLEM ENHPPVATSM SHQKHAMELA TRKRRKEKRE EEDLHSQYEH RHEQCEEMFE 960
  961 SSKDYDVKQA VAGIMALGKG HFSSMDRCDM DISVSLELSG RKTLGNVISV IQHTNSINRP1020
 1021 PSEHSEPYKY QGQRQEVQPM DAGEAYEMER SDSRLRQSFQ IGPKLVRQPN IQVPEIRVTV1080
 1081 EPDSPEKAPE VQVKEPEKHV EEFQWPQRSE TLAQFPPEKL PPKKKRLRLA DIEHSSGESS1140
 1141 FESACTSLSR SPSQDSNLSY SSTFSFDRED SLKSVSPARQ DEFGKPLELL AVPGSGHALP1200
 1201 VLAQRQQHEM RRSSSEQAPC NLRKEFPEVR SVSFDYGSLS PTSKVRPVDI NTGQAVRDKR1260
 1261 RGNLVRQESL NMDAEVTPVP PQAFPHYLSS TSPTFAVAVL SQNLPAFSTV NTFPHLSHPS1320
 1321 LLVPVRIQTH VPSYGSITYT SVSQIFDNQY DIVTSPVPTS QSQAARSPGI HDSHGALTAN1380
 1381 RRPSTHTLSV EALDLSSAKL KTGIPLSLTS RTISTTNASS GGANKRMLSP ASSLDLFMEV1440
 1441 KQQKRVKEER MFGQIVEELS AVELGTCNVS EENPRRSKMH VQDDSCRSKF IALRPKATEP1500
 1501 TDPGFDPAME SSSLESSSSP YSVSEACKEK PVQMDTAAQL VASRDALISD AEHSKELSRF1560
 1561 PSLRTATGVS WCYLNYTKPS CSQTNAPFSS AYATWCVSSH NPNPLEMSTG AVLALLRSRQ1620
 1621 RGDKVIYTMA TMCQSGTGKL VSSLILWRQT VEQLPRKPET KEVDVSYGKK VKDTSSRGKT1680
 1681 SKEEWKEREA SANQTVPTRI KIFEGGYKSN EDYVYVRGRG RGKYICEECG IRCKKPSMLK1740
 1741 KHIRTHTDVR PYICRVCNFA FKTKVDDVQH ESKTEVVVTT KHQFSDAEDS DGMDEEVDEI1800
 1801 DEDEDEEDDY DGDSTPKLRS RSTSPQSCGG ASLSVTGTAT APLPSADIRQ PSSGRPTGPD1860
 1861 HPTALTAEQR ERSMDEDSLT MLSPDQTNFL FDPYSSYLLS PGWESPIREP SPSRLRYPSP1920
 1921 RRELSPRGRA SPRWDSSPIR AGSPSFATIQ HLSPGSMERP MSPGTDLAGK RESAMRGRQR1980
 1981 VVLRAVSPRR GSHQHKGGGD KSRHQAKMEM AQQQAAFEVE MDQRSSLACA PPAPASSHQQ2040
 2041 NILSHLPLHS QQQARSLLPL LPVGCLQMLH SPPSSGTDAG PSAAPSPESS EGQRCSSREG2100
 2101 SVQGEDSRSQ SLDVKESGQE ENVQTCLKAI ASLKITAEDP H

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle