YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47221082
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.95
Transmembrane Helix	28	50	0.90
Non-Cytoplasmic	51	57	0.82
Transmembrane Helix	58	78	0.95
Cytoplasmic	79	90	0.82
Transmembrane Helix	91	112	0.82
Non-Cytoplasmic	113	153	0.88
Transmembrane Helix	154	176	0.89
Cytoplasmic	177	184	0.78
Transmembrane Helix	185	203	0.96
Non-Cytoplasmic	204	242	0.93
Transmembrane Helix	243	266	0.85
Cytoplasmic	267	278	0.91
Transmembrane Helix	279	303	0.86
Non-Cytoplasmic	304	327	0.90
Transmembrane Helix	328	349	0.90
Cytoplasmic	350	376	0.85
Transmembrane Helix	377	396	0.94
Non-Cytoplasmic	397	403	0.82
Transmembrane Helix	404	425	0.90
Cytoplasmic	426	483	0.98
Transmembrane Helix	484	506	0.91
Non-Cytoplasmic	507	512	0.82
Transmembrane Helix	513	533	0.95
Cytoplasmic	534	542	0.89
Transmembrane Helix	543	565	0.91
Non-Cytoplasmic	566	880	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGSQLLRVK VMDCSTEESH FSRCLNTFDL VALGVGSTLG AGVYVLAGAV ARDTSGPAIV  60
   61 LSFFIAALAS VLAGLCYAEF GARVPKTGSA YLYTYVTVGE LWAFITGWNL ILSYVIGTAS 120
  121 VARAWSATFD KMIGKYIEAF CRQYMTMNAP GVLAEYPDIF AVCIIIILTG LLAFGVKESA 180
  181 WVNKVFTCIN VLVLVFVIIS GFVKGNLKNW RLNPEEILNS TSNSSLNPAP SEDLLGAGGF 240
  241 LPFGWSGVFS GAATCFYAFI GFDCIATTGE EVKNPQRAIP VGIVASLLIC FVAYFGVSAA 300
  301 LTVMMPYYLL DKNSPLPVAF KYVGWDGATY AVAIGSLCAL STSLLVGMFP MARVMWAMAE 360
  361 DGLLFKGLAK INQRTKTPVT ATVTSGAWAA MMAFLFDLKD LVDLMSIGTL LAYSLVAACV 420
  421 LILRYPPPAS TVPEQHATAY EMTLTQEELG TDPSKEGILP PPGERFTVRN LFVPSCTEPS 480
  481 PQSGCVVSVC TCVLGVLVFA FSTVAVHGGP RTWSLSTLGV LLAVCLLLTL VVWRQPQSKA 540
  541 RLVFKVPLLP FLPVASLFIN VYLMMQLDQG TWMRFAIWMV LDDGRTGDPS SGLQDRVTGW 600
  601 APDSQCDDPE LAEFEMLECQ ELEMYLVEEG EDYVGLKDRK DVEVEQRAER QAVEGPTLPG 660
  661 AVEPSTEESR TEMPSEADVF LSCVSNISTT DNVMDEPVRT QQAEERSLPA ARVQGPRALS 720
  721 SGATTKLPAK ASSSSGIPKP VPPQQKESDS IRSSPPQKAK NLRPKIITYV RKTPPSRAQG 780
  781 TDAQHEASSA SSFKALKDQK AASQLKPTAV LCSSNFLFDK HRQEMQKADN HPSGTVVTGM 840
  841 KPSGGAAPQR LGTKSGSFHE DVPEKYLQEV RKSFFFVRTA