YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47219546
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAVMRVFN RSILGSAMCQ QYLAFSSAGK SAAGLRACQT LPEKVKIVEV GPRDGLQNEK  60
   61 TIVPSETKIH LIDLLSASGL PVIEATSFVS PKWVPQMADQ VEVMKGISRR PGVSYPVLTP 120
  121 NLKGFQAAVQ AGASEVAIFG AASELFSKKN INCSVDESLQ RFDEVMKAAK EAGVPVRGYV 180
  181 SCVLGCPYEG KVEPVKVAHV AKRLYAMGCY EISLGDTIGV GTPGSMRDML EVVSREVPVS 240
  241 ALAVHCHDTY GQALANILVA LQMGVSVVDS SVAGLGGCPY AQGASGNVAT EDVVYMLHGL 300
  301 GIQTGVDLSK VMDAGAFICR SLNRRTNSKV AQATCKL

Type	Start	End	Confidence
Signal Peptide	1	26	0.55
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	337	0.99