YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47219252
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFDNFNTD FYQSSYNVDD QSQAGYGYSA DNAYNKPYGQ YDYSQPMGYS SPGMMQPQQP  60
   61 YTGQIFQPTQ TYTPSASQSM YSNSFDDEPP LLEELGINFD HIWQKTLTVL HPLKAADGSI 120
  121 MNETDLAGPM VFCLAFGATL LLSGKIQFGY VYGISAIGCL GMYCLLNLMS VTGVSFGCVA 180
  181 SVLGYCLLPM ILLSSFGVLF SLQGSLGIVL TAAIIGWCSL SASKIFISAL AMDGQQLLVA 240
  241 YPCALLYGVF ALISVF

Type	Start	End	Confidence
Cytoplasmic	1	123	0.90
Transmembrane Helix	124	142	0.80
Non-Cytoplasmic	143	147	0.62
Transmembrane Helix	148	169	0.82
Cytoplasmic	170	175	0.54
Transmembrane Helix	176	200	0.80
Non-Cytoplasmic	201	205	0.52
Transmembrane Helix	206	227	0.85
Cytoplasmic	228	236	0.69
Transmembrane Helix	237	255	0.91
Non-Cytoplasmic	256	256	0.82