YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47218949
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEEKLPPG WEKRMSRSTG NVYYFNHTTN ASQWERPVAD GRGDPEKVRC SHLLVKHNQS  60
   61 RRPSSWRQQN ITRTKEEALE LIQGYIEDIK SGKEKFESLA SQFSDCSSAK NGGDLGLFGR 120
  121 GQMQKPFEDA SFALKVGDMS GPVFTDSGVH VILRTAGSGL VTAAATGFLH SQCQSAPFVP 180
  181 GHNLVGEGFN VVTLQRKGAY LIDVQSFLSP AGTCTLCSNS LLGHQLQKLP LSAVDWRPSS 240
  241 RCRADIYGSA HKSVSSLLET YTSQDSSDWK VGLNVGKFAN LVVGGSQSSA YKYAIARTRE 300
  301 DRHFFSLHRV TCSHYSYRVS SKPILSKEFS RDLTSLPHVY NSVTKPQYAR LILTYGTHYL 360
  361 RQVYLGGRLR RITAARTCLS TLNGLSSSEV HSCLSLGIGI GLGQLKLSAN QQSCRKVLNN 420
  421 QDVATSFGTG LFQHSTEVVG GADNFRFESG GLGQGPEVGR PPRILYVVPA AGHTHSHLSH 480
  481 PEGQRWFSDK ALALSQHPCG ANISLDQGPA GSIHLTPPGR FNATTAPPTP RSHGAPPPPA 540
  541 CTWVLQVPPG RTVLLAPSGL ERGWALAVGC VRDQDDHVLG SEGTVVLSRC DNDTATLSWR 600
  601 ADGGSARSAG LRYYVQEDER NSTEGRAPPQ SQTAALRTSP PPAAPDVVTG TEEGRGRLHQ 660
  661 GPAKEASSPR PPTRSTSQFR GPLRPTAAGN ADREALLFPE ETTNNGADAS GATHLAGGPV 720
  721 WTRPDFQNTF HTSGSKDMPA TSPTLRDSGA VSLLPGWIIA ASSSPGAASA LEDGAQKAAA 780
  781 TGPQSQTQGP TFTRFHRRPP TVSSPLSSAP SHSLRSHTGS PSTLQASTTP AVKSTASHLT 840
  841 PPTAPGSGHK AGAEKKEEKS WQWLPSSTPG GSSQKPGTTL DVHPGNPSAA SSEAPASTSS 900
  901 HAPRFFIVPD RPAAIKAGAL PAEGPGVQQA AGRLEQACRL TSASGCCSAQ QGITACRSLQ 960
  961 RPTTAAPRPA IRTSATITAS ARTTQDNYLF AGKQHKRTRW HFSGLDGTRL RRSCLVGNDF1020
 1021 WYMGQRCDLR MTRARLVGAC VAILLVIVTV IGLLAFVAVR RYKAILIQAK VDQTRSSSQY1080
 1081 GWRGSEASVG DGVLDSGKAS DLSVCSWPVE PIHWTPFPLL QQLASHRTPT VSVCVCVSEQ1140
 1141 YQRLHHQSHA LHSINNTRGL IETPEQSIKY FPVDASGSHT HTHTEVNAHG NAVWGPERLA1200
 1201 VPESWP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle