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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47218374
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGRVAVH RARKAALLCV VFLMARAWSS ASLALAGAAS SQGPQGCPPQ CSCSNQQGKV  60
   61 VCTRRGLTRV PPGIPANTRH LNLMENAIEA VQADSFRHLH HLEVLQLGRN AIRQIEVGAF 120
  121 NGLTSLNTLE LFDNRLTVVP SGAFEYLSKL RELWLRNNPI ESIPSYAFNR VPSLMRLDLG 180
  181 ELRKLEYISE GAFEGLQNLK YLNLGMCNIK GDLPNLSPLK GLEELEISEN QFTEIKPGFF 240
  241 KGLRSLKKLW MMNSQITVIE RNAFDDLSSL VELNLAHNNL SAVPHDLFSP LKYLVELHLH 300
  301 HNPWSCGCEA VWLAQWLREY IPTNSTCCGR CHSPASMRGR QLVDVDRGEG AAVQCSAPYI 360
  361 GDAPRDLNIS AGRVAELRCR TAPLSSVRWL LPNGTILTHA SGHPRISVLN DGTLNFSNVL 420
  421 AGDTGTYTCM VSNAAGNSNA SAYLNVSAAE LNTSNLSYFT TVTVEVIGPT TEMPKAKSTT 480
  481 TTAAAASGVA GGGGIGLGTT TTTASPSVFQ PVFISTPTVL LQSTDSPLGA AKPSVAPGPP 540
  541 GATSKPGKSG PSLDEVMKTT KIIIGCFVAV TLLAAVMLIA FYKLRKRHQQ KSTVAAARTV 600
  601 EIIQVDEEDL PPPASASQET ALTLPEIRDH NNIHKLDFIS HKSDYGFHKP KAEYKPQADF 660
  661 TLHKPKAEYT TYKPNMDFSG QKFIPDYNTH KSTPDFSLHR AKPNYSPVRQ VTALTSLKQN 720
  721 IAHLSQTLAL TQKQKTDFSP FKRDYNTQPK PKHDYSPLKS DYNTQHKAKE EYSPFKPDFG 780
  781 THPRCKPDYS PFRPDYSTQP KPKTDYAVQR SKADITYKPV DPYTPHKTAT DYSAFKTDFS 840
  841 PHKADYSAFK CDFSPHTQRP KLDSPHKMDY GSHKVDYSTL KPKYNTYKPT PHGAKWTENN 900
  901 VGNSLPRTLP SAITAMAEPF VIKTHGKEKV QETQI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle