YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68190657, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEAAILVIF PFCMAFAAVS DMISLTIANR VSILLVLSFA VLAPLVGMPV AEIGMHFLLG  60
   61 GTVLLATFAV FAIGGMGGGD AKLMAASAVW FGFNPGLMDY LLATALLGGA LTLALVSFRR 120
  121 SAFSPLVAHH VLLRHFAEEK SGIPYGVALG LGGLICFPQT PLMQWAMERL AAG

Type	Start	End	Confidence
Cytoplasmic	1	5	0.67
Transmembrane Helix	6	25	0.84
Non-Cytoplasmic	26	30	0.52
Transmembrane Helix	31	51	0.85
Cytoplasmic	52	56	0.58
Transmembrane Helix	57	79	0.87
Non-Cytoplasmic	80	99	0.68
Transmembrane Helix	100	120	0.91
Cytoplasmic	121	141	0.74
Transmembrane Helix	142	162	0.89
Non-Cytoplasmic	163	173	0.71