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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47217546
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENAHTKSVE EVYSYFCVNE STGLSLDEVK RQREKWGLNG KSLWELVLEQ FEDLLVRILL  60
   61 LAACISFVLA WFEEGEETIT AFVEPFVILL ILIANAIVGV WQERNAEDAI EALKEYEPEM 120
  121 GKVYRQDRKT VQRIKARDIV PGDIVEVAVG DKVPADIRIC SIKSTTLRVD QSILTGESVS 180
  181 VIKHTDPVPD PRAVNQDKKN MLFSGTNIAA GKAVGVVVAS GVNTEIGKIR DEMAATEQEK 240
  241 TPLQQKLDEF GEQLSKVISL ICIAVWIINI GHFNDPVHGG SWFRGAVYYF KIAVALAVAA 300
  301 IPEGLPAVIT TCLALGTRRM AKKNAIVRSL PSVETLGCTS VICSDKTGTL TTNQMSVCRM 360
  361 FVLNKVEHDS CSLSEFTITG STYAPDGEVY QNGKRVKCTQ NDALVELATI CALCNDSSLD 420
  421 FNEVKGVYEK VGEATETALT CLVEKMNVFD TDVSSLSKID RANACNSSVH IPTQLTRQKS 480
  481 FTPSIHLAPQ VIKQLMKKDF TLEFSRDRKS MSVYCTPKNR SMGKMFVKVC PNERAKVFLC 540
  541 LVFRFMDAFF SSCTHQGAPE GVIERCTHVR VGNNKVPLTA GVREKIMSVI REYGTGHDTL 600
  601 RCLALATRDN PPKIEDMILS DTARFAEYES DLTFVGCVGM LDPPRQEVAA SIMLCRQAGI 660
  661 RVIMITGDNK GTAVAICRRI GILSEDDDVE CMAFTGREFD ELSPQAQRDA VTHARCFARV 720
  721 EPSHKSKIVE YLQGFDEITA MTGDGVNDAP ALKKAEIGIA MGSGTAVAKS ASEMVLADDN 780
  781 FSSIVAAVEE GRAIYNNMKQ FIRYLISSNV GEVVCIFLTA ALGFPEALIP VQLLWVNLVT 840
  841 DGLPATALGF NPPDLDIMEK PPRNAKEPLI SGWLFFRYLA IGGQLMTVIT SLLQFSGINL 900
  901 PPPPLVGYVG AATVGAAAWW FTLSEDGPQV TLYQLSHFLQ CGPDNPEFEG LDCHVFESPY 960
  961 PMTMALSVLV TIEMCNALNS LSENQSLLRM PPWENVWLLG AICLSMSLHF LILYVEPLPP1020
 1021 RCYNIKMSQL DNPSQLLLIS NTSITTGFMV EPSLSSAPAA AAAAAVIFQI TPLDTTQWMM1080
 1081 VLKISLPVIL LDELLKYSAR HYMDF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle