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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47216921
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFVDLRLA LLLSAQGLLV RAQGEDDRPS GSCTIGGQVF ADRDVWKPEP CQICVCDSGT  60
   61 VMCDEVICED TSDCPNPVIP HDECCPICPD DGITPCLSLF SVAYGPTGTR GPKGDRGPAG 120
  121 PPGRDGIPGQ PGPAGPPGPP GPPGLGGNFS PQMSGGYDDK SSPAMAVPGP MGPMGPRGPP 180
  181 GPAGPSGPQG FTGPPGEPGT HASPRSPWPL WKDGEDGARG FPGTPGLPGI KGHRGFSGLD 240
  241 GAKGDTGPAG PKGPRGLPGE RGRTGASGPA GARGNDGAAG AAGPPGPTGP AGPAGFPGGP 300
  301 GPKGDAGPQG ARGGEGPAGA RGEPGNPGPA GPAGPSGAPG NDGAAGAKGS PGAAGVAGAP 360
  361 GFPGPRGPPG PQGAAGAPGP KGNTGDVGAP GAKGEPGVKG EAGAAGVQGP PGPSGEEGKR 420
  421 GARGEPGPAG ARGAPGERGG PGGRGFPGAD GPAGPKGATG ERGAPGVAGP KGATGETGRT 480
  481 GEPGLPGAKG MTGSPGSPGP DGKMGPAGAP GQDGRPGPPG AVGARGQPGV MGFPGPKGAA 540
  541 GEPGKTGERG AMGPSGAVGA PGKDGEVGAQ GPAGPAGLQG ERGEQGPAGA TGFQGLPGPQ 600
  601 GAVGETGKPG EQGVPGEAGL PGPAGSRGDR GFPGERGAPG AAGPTGARGS PGPAGNDGAK 660
  661 GDAGAPGNPG AQGPPGLQGM PGERGAAGLP GLRGDRGDQG AKGGDGAPGK DGPRGMTGAI 720
  721 GLPGPAGASG DKGEPGPAGA VGPAGPRGAP GERGESGPPG PAGFAGPPGA EGQPGAKGDA 780
  781 GENGAKGDAG PAGPAGPTGS CWKHWPQGIS WTQWTSWCYW IPWCCWQSRT SWPLCKFCSN 840
  841 VLCSVTGLSV GGELIFLFTK RATLDLLDPQ DLLAKKEPKE TVVILDLLVA PVRWDLLEPQ 900
  901 EFLERRVALV PMVSLVALVC LDLRVLLEVV VLLVCLDREE REVSLAPQDL LERQESREEL 960
  961 VPVVSVDPLD PWDPLDWLDP LVSLDVRELL VTREPLVVME LLAPRETVES LAPQELLVPL1020
 1021 DPLAPLDLLD PPERTVTVER ADLLALLVLL ALLDLVVLLE LSESRDLLVL LDPLDLEAPL1080
 1081 VQLDLLVRTV CLACLDPLDL LDLVDVLEKW DPLVLPDLLD PPGAPGAPGG GFDLGFISQP1140
 1141 QEKAPDPYRM FRADDANVLR DRDLEVDSTL KSLSQQIEQI RSPDGTRKNP ARTCRDLKMC1200
 1201 HPDWKSGEYW IDPDQGCTQD AIKVFCNMET GETCVHPTQT EVAKKNWYLS KNIKEKKHVW1260
 1261 FGETMNDGFQ FEYGSEGSQP EDVNIQLTFL RLMSTEASQN ITYHCKNSVA YMDAAAGNLK1320
 1321 KALLLQGSNE IEIRAEGNSR FTYSVLEDGC TSHTGTWGKT VIDYKTSKTS RLPIIDIAPM1380
 1381 DVGAPDQEFG LEVGPVCFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle