YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108764777, gi...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRAAEPGV GRLLLVVDSL DLGGAERHVA GLAAALRRRG CEVVVACSTR GMLARSLERE  60
   61 GVPVVSMTRR LAKRRFSPAF ARGIRRLLAG RGRFDLVHAH VYAAAAASAA ATLGLGVPLV 120
  121 VTEHTEASWQ GRRARAVTRW YCRRARHIIA VSTPIRRRLI GRDGVPPQKI SVIPTALPEA 180
  181 EGGGIPSGAP AENGRLAGVV ARLQPEKGVA TFLEAASRIA PRAPGVRFVV VGDGPLRGEL 240
  241 SQLAAGLGLE GRVRFLGFRP DAREIIRRLD VLVVPSFTEG APLVVLEAMA SGVPVVASAV 300
  301 GGIPDQIRHG REGLLVPTGD PVALGEALLS LLDNPGLARR MGEAGRERAF SAFGHDRMVR 360
  361 RIESVYRAVL SGRPAADVVR AADAERPPAG GLTRGSPS

Type	Start	End	Confidence
Cytoplasmic	1	95	0.65
Transmembrane Helix	96	120	0.58
Non-Cytoplasmic	121	398	0.95