YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68512319, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANYGFIIDN RKCIGCHACT VACKAEHEVP LGVNRTWVKY IEKGEFPDTQ RAFHVMRCNH  60
   61 CEDAPCVEAC PVTALYVRED GIVDFNWDRC IGCKACTQAC PYDALYIDPE SHTAAKCNYC 120
  121 AHRVDMGLEP ACVNVCPEQA IISGDMDDPA SEISRLLARE KVTVRRPEKG TKPKLFYING 180
  181 DEAALTPEDA PVRSDYMWSN QRRGVGHHAP SGRDGNASVA QGVIPLGTKP GREQPAPQPE 240
  241 RARRTYDEPN KGVMWGKEVP GYVFTKALAS GAVAIPFLAA GLGLEVAASA LRAGAVLGLV 300
  301 FMALTGILLI MDLDRPDRFH YVLLRPQWRS WLVRGAYIIT GFGGLITLWL ALELLGAGGI 360
  361 ATAVLSWPLV VLAAATAVYT AFLFAQARGR SFWQSPALPV HMGAHTAVAG AAVLYLASFF 420
  421 VSGLQPLRAA LEPTLVLGLL GGLFVLWAEL GSRHPDRDAE RAAKMIYGGR YRRLFWGGSV 480
  481 ALGSLLPLAL TVAGILLAAP VAVAVAGALA LLGILITEHV WVEAPQLIPL A

Type	Start	End	Confidence
Cytoplasmic	1	261	0.99
Transmembrane Helix	262	283	0.92
Non-Cytoplasmic	284	289	0.80
Transmembrane Helix	290	311	0.93
Cytoplasmic	312	330	0.95
Transmembrane Helix	331	352	0.94
Non-Cytoplasmic	353	362	0.74
Transmembrane Helix	363	383	0.94
Cytoplasmic	384	400	0.81
Transmembrane Helix	401	421	0.90
Non-Cytoplasmic	422	428	0.80
Transmembrane Helix	429	451	0.88
Cytoplasmic	452	472	0.92
Transmembrane Helix	473	493	0.91
Non-Cytoplasmic	494	500	0.52
Transmembrane Helix	501	522	0.87
Cytoplasmic	523	531	0.96