YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47216502
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.77
Transmembrane Helix	59	80	0.88
Non-Cytoplasmic	81	87	0.68
Transmembrane Helix	88	108	0.85
Cytoplasmic	109	686	0.58
Transmembrane Helix	687	710	0.83
Non-Cytoplasmic	711	720	0.49
Transmembrane Helix	721	744	0.85
Cytoplasmic	745	768	0.44
Transmembrane Helix	769	791	0.72
Non-Cytoplasmic	792	798	0.59
Transmembrane Helix	799	822	0.90
Cytoplasmic	823	828	0.57
Transmembrane Helix	829	854	0.81
Non-Cytoplasmic	855	937	0.71
Transmembrane Helix	938	960	0.86
Cytoplasmic	961	1019	0.80
Transmembrane Helix	1020	1041	0.72
Non-Cytoplasmic	1042	1050	0.57
Transmembrane Helix	1051	1075	0.60
Cytoplasmic	1076	1095	0.67
Transmembrane Helix	1096	1116	0.58
Non-Cytoplasmic	1117	1137	0.78
Transmembrane Helix	1138	1160	0.88
Cytoplasmic	1161	1177	0.78
Transmembrane Helix	1178	1199	0.77
Non-Cytoplasmic	1200	1216	0.77
Transmembrane Helix	1217	1236	0.92
Cytoplasmic	1237	1253	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAARNGKSG LLEKWRIDEK PVKIDKWDGA AVKNSLDDAA KKVMLEKFGY MENFCLVDGR  60
   61 LLICTVSCLF AMLALVWDYL YPFPESRPVL ACCVVSYFIM MGVLTLYTSY KEKNIFLVAL 120
  121 HKDPAGMDPD HIWHLSSSLK RFDDQYTLRV SFTDGKSRRY REAEFTKSVS AFFDENGTLV 180
  181 MDQFDKCISK LHYTLASEKK TKLMGVVTQW VEPPQGADQQ EEDWRQSVIM ACLMAAWSIH 240
  241 NPTVTNSIIM NTNGPPDLML DPCTVCISMD EAVKKWPASG QQTPLLHGHA RKVDNNLTEA 300
  301 QRFSSLPRRP AVNIEFRNVS YSVREGPWWR KKGLRPHVAK VHELNVHCPS VQSWAPACPT 360
  361 PQSGEPAQKT PSRFHGYKTL LRGISGKFTS GDLVAIMGPS GAGKSTLMNI LAGYRETGMK 420
  421 GEILINGQPR DLRSFRKVSC YIMQDDMLLP HLTVHEAMMV SANLKLQDKS AARRKMVQEI 480
  481 LVALGLLDCV TPGRLTCQVV RGRGWPSLWS SSTTLRSCSL TSPPGEAAAN GAPAGPSLYI 540
  541 PEDHLVKRTG VVLAHPLPVC FSGLDSASCF QVVSLLQALA QGGRTIICTI HQPSAKLFEL 600
  601 FHKLYVLSQG QCIYRGRVSS LVPYLRALGL NCPTYHNPAD FVMEVASGEY GDQMIRLVKA 660
  661 VQKDEQAEPN GDTRLHPLLW QRADEVLTHL RISSHIGIGV LIGLLYLGIG NEAKKVLSNS 720
  721 GFLFFSMLFL MFAALMPTVL TFPLEMGVFL REHLNYWYSL KAYYLAKTMA DVPFQVVFPV 780
  781 VYCSVVYWMT AQPPDAGRFV LFLSLGVLTS LVAQSLGLLI GAASTSLQVA TFVGPVTAIP 840
  841 VLLFSGFFVS FNTIPWYLQW MSYISYVRYP SPPALCGPVQ PVRLKHLWTS GSRYGFEGVI 900
  901 LAIYGLDRMD LHCDEDETCH FQKSEAILKE LDMLDAKLYL DFIILAIFFF SLRLLAYFVL 960
  961 RYKISLLILK NQGELLGCET SLDLVELQDF LDHEEPKLLQ GSFLPPMVLA RQMMSPRPGA1020
 1021 CFVNELYGST ALFPFLLLQI LSDLHAVSAP FCFLQIFCLY SYAQVQFCSL AVMAYDRYLA1080
 1081 ICQPLQYQQL MTCTRASFLI TLWLNIRLPL CGNLINSLYC HNYLVVKLSC SDTRVNNIYG1140
 1141 LVGTVLTVLV PLVPILFSYL RILQVCFSGS RQTRQKAVST CLSSPHLPAQ LLFQLLLFAS1200
 1201 LQSRFDMTSV PSMLQMFLSL YFLLIQPVLN PLLYGLQMTQ IRKFYKRLLS CEG