YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75702703, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSITVEILI ILVLIIANGI FSMSEMAIVS ARKVRLQQLA NQGDPKARAA LKLAESPNNF  60
   61 LSTVQIGISL IGILTGAFGG ATIASRLAVY VRLVPFLSPY SEPVSFGIVV LIITYLSLII 120
  121 GELVPKRLAL NSPERIAAVV AIPMRALATL ASPAVHLLSA STDMVLRTMG ITPSLEPQVT 180
  181 EEEIKILIEQ GTEAGTFEEA EQDMVERVFR LGDRPVSSFM TPRPDIVWLD LEDTTEENRQ 240
  241 KMSENGYSRY PVCQGGLDNV LGIIPVTDLL ARSLRGDSLD LTVGLRQPVF VPESTRGLKV 300
  301 LELFKQTITH MALVVDEYGV IQGLVTLNDI MSEIVGDVPS ADGEEEPQAV QREDGSWLLD 360
  361 GMLAVEDFFE LFDLEEWDFE ERGSYQTLGG FVITHLGRIP AAADHFEWQG MRIEVMDMDG 420
  421 NRVDKVLVVP TTNKVADTQT AD

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	60	0.84
Transmembrane Helix	61	84	0.83
Non-Cytoplasmic	85	103	0.70
Transmembrane Helix	104	124	0.90
Cytoplasmic	125	135	0.80
Transmembrane Helix	136	158	0.72
Non-Cytoplasmic	159	442	0.88