YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41324431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQSKQKDL QADIARITAV KSDTVPNSQS MTFGAAWNDI VRGFKQHELW LQLGWQDIKQ  60
   61 RYRRSVLGPL WITIATGVMA LALGLLYSVL FKIPIAEFLP HVTVGLIIWN FISGCIKEGS 120
  121 DIFIDNEGLI KQLPSALSVH VYRLVWKQAL FLAHNLVIWV ILMMIFPRPL GWDVLLIIPA 180
  181 MFLLVINGVW VVMFFGIIAT RYRDVSPLLE AGTQLLFYVT PIVWMTSTLQ SQSAEIGNRA 240
  241 RLAELNPLYH YLEIVRAPMV GADLPAYHWW IVLAFTFVGL GLALLAMKQW RFRVSYWV

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	90	0.88
Non-Cytoplasmic	91	97	0.67
Transmembrane Helix	98	116	0.84
Cytoplasmic	117	149	0.84
Transmembrane Helix	150	167	0.93
Non-Cytoplasmic	168	174	0.74
Transmembrane Helix	175	198	0.91
Cytoplasmic	199	207	0.78
Transmembrane Helix	208	228	0.78
Non-Cytoplasmic	229	265	0.90
Transmembrane Helix	266	287	0.93
Cytoplasmic	288	298	0.88