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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|75704032, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITNDNVEFS TLVDLLRYRA QNQPTQTAYT FLVDGETESI SLTYQELDQK ARAIATQLLQ  60
   61 RGVPGSRALL LYPPGMEFIP AFFGCLYAGF IAVPAYPPRR NQKMSRLQAI VSDAEAVVAL 120
  121 TTSTELTSMA LQLAENPTLT AIPWITTDNL NANIAEDWQQ PNINSDTLAF LQYTSGSTGT 180
  181 PKGVMITHGN LLHNSQLIYN FYQHTPNSQG VIWLPPYHDM GLIGGVLQPL YGGFPVTLMA 240
  241 PVAFLQKPFR WLQAISHYKA TTSGGPDFAY DLVCRQITPE QLASLDLSSW EVAFTGAEPI 300
  301 RAQTLDRFAE TFAPCGFRRE AFYPCYGMAE TTLIVSGGWK SEAPIVRHID TTALLQNQVI 360
  361 DTTTAAGGKA IVGCGKSSPD QTVLIVNPES LTSCADGQVG EIWVSGSSVA QGYWNRPEQT 420
  421 QHTFHAYLAD NTTGPFLRTG DLGFLQDGEL FITGRLKDLI IIMGRNHYPQ DIEFTVESCH 480
  481 PALRPAGGAA FAVEVNNVEK LVIVQEVERS YLRKLNADEV IGAIRKAVAE HHDLQTHTIA 540
  541 LIKTNSLPKT SSGKVRRSNC KAELEAGSLD IIAQWSADAQ NHSPSEKLIA PQVEKTVNTE 600
  601 AVATWLLTKV SEQLQVPAQT INVNEPLAQY GLGSLAAVRI SGELQEWLGR ELPTTLLYDY 660
  661 PSIAALAQYL GDGVPQPKVV SQQPTDNHAI ASGGAAPIAI VGIGCRYPGA NNPEAFWQLL 720
  721 RNGVDAISEV PQQRWDVNSF YDPNRATPGK MNTRWGGFIS EVDQFDAPFF GISPREAESL 780
  781 DPQQRLLLEV CWEALENAGK APSKLAGSNT GVFVGISNFD YSQLLAKQVS GLDAYSGTGN 840
  841 AFSIAANRIS YLLDVHGPSW AVDTACSSSL VAVHQACQSL RQGECEMALA AGVNLILTPQ 900
  901 LTVTFSQAGM MAGDGRCKTF DADADGYVRG EGCGVVVLKR LSDAYRDGDR ILAVIKGSAV 960
  961 NQDGRSNGLT APNGLAQQAV IRQAMQNAGV APHEIGYVEA HGTGTFLGDP IEVNSLKTVL1020
 1021 APGRAPGDTC VIGSVKTNIG HLEAAAGIAG LIKTVLSLHH EEIPPHLHLK QVNPHISLAD1080
 1081 TNLSIATTLL PWNRGNKRRL AGVSSFGFGG TNAHIILEEA PLVSPKDTVS DERPLHLFTL1140
 1141 SAKSENALRD LAKDYENYLG NHPDASLTDI CFTANTGRSH FDHRLVAIAQ SNIQLQTVLG1200
 1201 AYATGKKTSQ LVSGKIENKQ QPKIAFLFTG QGSQYINMGR QLYATQPTFR AAIDQCEQVL1260
 1261 RSYLDQPLLS VLYPDTESSC IDETAYTQPA IFAVEYALAQ LWKSWGVEPT AVIGHSFGEY1320
 1321 VAACIAGVFS LEAGLKLVTE RSRLMQALKS MGAMAAVFAS EEQVQAAIAE YSPEVTISAV1380
 1381 NAPDNITISG TVAKIAAAIA KFTAQGIETR RLNVSHAFHS PLMDEMLDAF EQATNLVNFQ1440
 1441 APQIPFVSNV TGNFLPVGQV PDAQYWRSHT RQSVRFMDGL NTLLAEGYEL FIEIGAKPVL1500
 1501 CSLGKRCHGG ENSVWLPSLN AKRDNWQTLL ESLSTLYLRG VEIDWAGFES DYSSQLVALP1560
 1561 TYAFQRKRYW IQSPNRVDNI PVNHHSNNSQ PVTSASSDSA KLPSQALVEK MLKQQLQIMS1620
 1621 QQLEVLRTHN LTKGQFLPLQ HGHLPKPPKL NHQPSI

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