YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148227942, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIRKKNSKT PPVLSHEFII QNHADIVSCL AMVFLLGLMF EITAKVAVMF VTLQYNVTIP  60
   61 VEGVLGEPTS LYHYGIKDMA TVFFYMLVAI ILHAVIQEYV LDKINRRMHF SKTKHSKFNE 120
  121 SGQLSAFYLF SCIWGASIIV SENYFSDPIS LWKGYPHTYF PFQMKFFYIS QLAYWFHAFP 180
  181 ELYFQKTKKE DIPRQLVYIG LYLFHIIGAY VLNLNRLGLV LLVLHYFVEF LFHMSRLFYF 240
  241 SNERYQKGFT VWAVLFVLGR LLTLILSVLT VGFGLARAEN QELDLSNGNF NILAIRITVL 300
  301 ASICITQAFM MWKFINFQLR RWREHSSPQP SSQRKKATSA KGKASRKEKE NGVNGTVTSN 360
  361 GADSPRSRKE KHS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.85
Non-Cytoplasmic	44	80	0.89
Transmembrane Helix	81	101	0.94
Cytoplasmic	102	121	0.94
Transmembrane Helix	122	141	0.93
Non-Cytoplasmic	142	161	0.83
Transmembrane Helix	162	179	0.84
Cytoplasmic	180	194	0.76
Transmembrane Helix	195	214	0.87
Non-Cytoplasmic	215	220	0.69
Transmembrane Helix	221	240	0.91
Cytoplasmic	241	248	0.94
Transmembrane Helix	249	273	0.87
Non-Cytoplasmic	274	291	0.90
Transmembrane Helix	292	315	0.91
Cytoplasmic	316	373	0.98