YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13936277
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIRKKTTKN PPVLSHEFVI QNHADIVSCV AMVFLLGLMF EITSKVAVLF ITVQYNVTIP  60
   61 ANGGPEEATV NYFHYGLKDV ATIFFYMLVA IIMHAIIQEY VLDKINRKMH FSKTKHSKFN 120
  121 ESGQLSAFYL FSCLWGASIL GSENILSNPV SLWDGYPHTL MQFQMKFYYI CQLGYWLHAI 180
  181 PELYFQKAKK EDIPRQLVYI SLYLVHIAGA YALNLNRLGL VLLVLHYFVE LIFHVSRLIY 240
  241 FSNEERQSGF TVWAVLFVLG RLLTLSLSVL TVGFGLAGAE KQGLNLAEGS FNVLFVRVTV 300
  301 LAAICITQAF MMWKFINFQL RRWREQAQTQ TLKKKSSSSK SKSKKANGVN GSVGASGADS 360
  361 PRARKEKSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	42	0.85
Non-Cytoplasmic	43	81	0.89
Transmembrane Helix	82	102	0.95
Cytoplasmic	103	122	0.95
Transmembrane Helix	123	142	0.90
Non-Cytoplasmic	143	164	0.79
Transmembrane Helix	165	185	0.73
Cytoplasmic	186	195	0.81
Transmembrane Helix	196	215	0.83
Non-Cytoplasmic	216	221	0.68
Transmembrane Helix	222	241	0.90
Cytoplasmic	242	249	0.93
Transmembrane Helix	250	274	0.85
Non-Cytoplasmic	275	292	0.87
Transmembrane Helix	293	316	0.90
Cytoplasmic	317	369	0.97