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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47215569
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIMEGWGGG XXXXXXXXXX XXXXXXXSPI RRAPNLSPNF EEKFPSYKQK RRSGRQVKRR  60
   61 KYNEDLDFKV VDDDGETIAV LGAGRIAALN TTALAWQAEE PPEDEANIIE KIISVRTQNT 120
  121 KKDQEEEIEE FYVKYRNFSY LHCKWATLKE LEKDPRIHQK IKRFRTKQAQ MKHLFTEPDE 180
  181 DLFNPDYTEV DRVLDVAVTT DTETGEEVTH YLVKWCSLSY EEATWELQED LDPEKIREFE 240
  241 EVQKLPADLR HVDRPPSEKW QKLDFSRDYR NGNELREYQL EGMNWLLFNW YNRKNCILAD 300
  301 EMGLGKTIQS ITFLYEIFNM GIRGPFLIIA PLSTITNWER EFRTWTHMNV IVYHGSQISR 360
  361 QMILQYEMFY RDQQGNTIPS VLKFHGLITT FEMIMADCPE LRKLHWRCVV IDEAHRLKNK 420
  421 NCKLLEGLKL MNLEHKVLLT GTPLQNSVEE LFSLLNFLEP LQFPSESTFL EEFGDLKTDE 480
  481 QVKKLQAILK PMMLRRLKDD VEKNLAPKEE TIIEVELTNI QKKYYRAILE KNFSFLSKGA 540
  541 NQHNMPNLIN TMMELRKCCN HPYLITGSAE EKILESFRKS YSPDAADFQL QAMIQAAGKL 600
  601 VLIDKLLPKL LAGGHKVLVF SQMVRCLDIL EDYLIQRRYS YERIDGRVRG NQRQAAIDRF 660
  661 CKPDSDRFVF LLCTRAGGLG INLTAADTCI IFDSDWNPQN DLQAQARCHR IGQSKAVKVY 720
  721 RLITRNSYER EMFDKASLKL GLDKAVLQDI NRKGSLNGVQ QLSKLEVEDL LKKGAYGALM 780
  781 DEEDEGSKFC EEDIDQILQR RTQTITIQTE GKGSTFAKAS FISSGNRTDI SLDDPNFWQK 840
  841 WAKIAEVEID SKSEKESLVI DTPRVRKQTR HYNSFEDDEL MEFSELDSDS EEKPCRTRRL 900
  901 GERSRRYLRA ECFRVEKNLL IFGWGRWKDI LNHGRFKWHL AERDMELICR ALLVYCLRHY 960
  961 KGDDKIKSFI WDLISPTKEG QDQTLLNHSG LSVPVPRGRK GKKLKNQLNI PEAKSADWMV1020
 1021 HCNPEVVLHD ESYKKHLKQH CNKVLLRVRM LYYLKVEVLG DAASEAVEGM SASKLEVSLP1080
 1081 DIDYIEIPAP WWDAEADKSL LIGVHKHGYE RYNAMRADPD LCFLEKVGRP DVTALSADQG1140
 1141 GVGGGGGGGG GGGGGGGGEG AAAAAAAAAA AAAGEGAAAA AAAAGGGDGD GGGDTQLSGD1200
 1201 LSSQDETLVT TTTTTGSGTG VAALHVVQAR PLWPTGPALT ARLRRLITAY QRFALRREPL1260
 1261 IRHDFLLHDG LVGFGIGGAG ATQSQGGGPL PWHFNDQLKR CSVINTETDP LFLEWQRRWT1320
 1321 RREQADFYRT VSSFGVVYDT DMKAFDWSQF RVLARLERKT DESLERYFNS FVNMCRTACK1380
 1381 LPPRKEEAVD QAVFVEPLTE ERAARTLYRI ELLRKIREQV LHHPLISARL QLCRASPYLP1440
 1441 PWWESGKHDR DLLIGAARHG LSRTDFYILN DPQLSFLDSH RAYIRGHHSH FHLQSHHHSS1500
 1501 ISSSSFGSSS SSLHPQLPHC CLYEPGLMRH SPHPPDYPHQ TAHHQQQQPM TLSVASPSSS1560
 1561 STSSHLHPTS LDTHSSSSPG LGIVPGSQGD FLDCPLDETI ELGSLHHDAL SADALHGGKA1620
 1621 SKDTLNGFPF NSAAGGQSML NSYGVGGTDL DSKLRSDVLV GEQGFSEETG LMATAPWDGT1680
 1681 DHSSPAHHMF NESDPILGPS TLETDFLEED NEDAQGRHRG EEEGGTLEEC LGLPPSSPTS1740
 1741 HPAGDSVEPL SSSYMLFKDI SVSEEPSTDQ TDLSASSPPP YVPPPPLPLS DITAHEPQER1800
 1801 LSHSDVADGL TNPVSEGGQE ESTAFEFDDK DGAVEDLSRA AIEQTERIDT SLEVPDSHLD1860
 1861 QDPEQTLGVL TTPMDLPQVD ELEAAASLVG QDKKMELLPQ LSPNLQESFE PAGQKESLSP1920
 1921 DERPYFRKLE QEGSFVCPQA IQESGETVEG LILYQTVEEE TQMEKTPGDI VEVTGSPQNP1980
 1981 IEAAPVCLSE QVERITERQM DDEPFMDVSL MQSCDEMTEK TAQHLDAKAT VMELDSIYSG2040
 2041 YARHSSPAAS TVSPPTAPSS DEGTGRRNEG VQTAASVGQE TYESVTEGQN LPPGITECTN2100
 2101 GRLSEDLQQR ESDAAPASPP NTTSSHPPVF LSPDGDRGNK PQELQLPVKT EETKRESAED2160
 2161 VYPDSSDVKQ GDFLAAVKAE DVVAKDEQLD YPIKPEALET KSNLLSISVK PEGFQRKAEV2220
 2221 YSAFSDGGKF KTETKPEDLE LATYPDSSEE KCKAKAEPLE FPLPDLKGKI KQELLEADST2280
 2281 VLTPKLEQTD GLVDAAASLV MKGQAKALSS PAPVCENDCH HDAKEPTIAQ LLQDKTLYSF2340
 2341 SEWPKDRVII NRLDSICHAV LKGKWPSSSE QYDSAGSLAG SSCLANSLGQ HQQQRASFLP2400
 2401 SPASGSLPGQ ARVQQANAGL GFSIPPPLTR LPKERLVAPP YLPDLKQPGG RRAFDYEAAA2460
 2461 AAAAAAAAKV LAGKTASSCA PTTSASGGSP VAASAGAMMM NGWQESAIDL TKTSGEISTT2520
 2521 GTGEAAATPG MGHHGDSDGA AQKLPPPPPP ITAPLAGCVG IDMAGILQAG LIHPVTGQII2580
 2581 NGNLRGDDSL KRRRGRRRNV EALYSDHSSV SSSTSSPAPS PSDRPAGPPT PSSTPTPTPT2640
 2641 PTQTPPQPEI VAIDREAASK GLMEWLRQNP GYSMDLPTFA HSGAGLLQGF VERPKQRRHR2700
 2701 CKDPTKLDIN TLTGEERVPV IHRGTGRRLG GAMAPAIKEL SRWLDANSEY FVAPDWCDVV2760
 2761 KHSVSRVLSE RPEYFHPSHV VFLPPSPRFL SGLQGYLPEA KFSRILTEPV SRDLGSRRRG2820
 2821 RRPRSEMPKP LLSVSDSASS SLASPLFMNG GLMGSMDSMV TMQNLRGGIP GIPISGIMAA2880
 2881 GFPHGFTAAV QAGGVATSVD GAKNGLNMLP MMLQSIPHPH GGALPQHAMF SVGAMMAHTP2940
 2941 PPSSSLPTSS SSSSSSLPAE KVTTTTAAST PEAASPSSTT AAESAASSGS DGGEKGRSQD3000
 3001 ETRAAESRPG GAEGAAVITS TSRAHVGAAI GAGAGSHITF NPFLIPGMSH GLLYPHMFLP3060
 3061 HGGIMALPAM 

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