YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM_PEA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRYDPNPF DEEQVNPFSN PRSAASATNS RPAPLNPDRA DYNYGFGPTV DIPLDTSTDG  60
   61 KKKERDLQAK EAELRKREQE VRRKEEAIAR AGIVIEEKNW PPFFPIIHHD ITNEIPIHLR 120
  121 TLQYVAFFSL LGLVLCLTWN VVSVTAAWIK GEGVKIWFLA IIYFIAGVPG AYALWYRPLY 180
  181 RAFRTDSAIK FGWFFMFYLL HIGFCILAAV APPIVFKGKS LTGILSAIDV VGDYTLVGIF 240
  241 YFIGFGFFCL ETLISIWVIQ QVYMHFRGGG KTAEMKREAA LGAMGAALR

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	149	0.86
Non-Cytoplasmic	150	155	0.86
Transmembrane Helix	156	176	0.96
Cytoplasmic	177	193	0.86
Transmembrane Helix	194	216	0.90
Non-Cytoplasmic	217	236	0.93
Transmembrane Helix	237	259	0.91
Cytoplasmic	260	289	0.96