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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47215017
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.19
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLSFDDPS LDNLDPTLPL HDPSDIDTAL LSDIDDMLQL INNQEMEFGG LFDNPPYTGL  60
   61 PPPLQENPGL TQASTPAPPT NTTVAPLSSS SSSILSSSPH LDALLGPPII RSSSNSFQPP 120
  121 TFQQSPLTQV SSPTQRQQTA ASPKAPSVEP RQTTLSPSSP AQASSPHGSP GPNPGISSTP 180
  181 QGLFTSPAPQ SPTQAQSQTP SPAQPAQTSY IKKNSLTVGS PSTVTQPALS LPSSPASVQP 240
  241 AVTVQTQLQG LTTTSPLLAT TASLPTQTIT SHVQQVPVLL QPQFIKAESV LLTTLKPDPC 300
  301 MVTTVASPTS LATTTNPVQS TPLQAFVGGG TILTTVPLVV DADKLPINRI AIAGKVACQP 360
  361 HKGEKRTAHN AIEKRYRSSI NDKIIELKDL VAGTEAKLNK SAVLRKAIDY IRYLQQTNQK 420
  421 LKQENMTLKM SAQKNKSLKD LVAMEVDNVT DVKNELPTPP ASDVGSPTSF SQCGSDSEPD 480
  481 SPMVEDAKVC RGSAGGMLDR TRMALCAFTF FFLSLNPLAA LFFSSGSRST AKGATPASAH 540
  541 HGGRAMLNVD TAADSWGWMD WMLPTILVWL LNGVLVSGVL IRLLVYGEPV TRPHSGSSVL 600
  601 FWRHRKQADL DLARGDFAQA SQNLWTCLKA LGRPLPTSQL DLACAALWSL LRFCLQRLWV 660
  661 GRWLATRAGG LRSDRPLQED ACKSSRDAAL VYHRLHQLHM TGKLNGSHLS AVHMALSAVN 720
  721 LAECAGSCLP VSSLAEVYVS AALRVKASLP RILHFTSRVF LSSARQVCLS ASGSVPPAMQ 780
  781 WLCHPLGHRF FVDGDWAIRN IPKESIYSHA GNTVDPLAQV TQAFREHLLE KALYCVAQPC 840
  841 GDKNTSQGNG EFADALEYLQ LLISASDAAG ATSQSFAIGS NMATVTGCDP HSKWWSSIVV 900
  901 VIINWLQADD AAAERLYPTV EHLPRSLQNA EYVRLWYTHT YTSLLPKASL NIFRAVRALL 960
  961 SKPENCQLSL SYSDKASALL RDSLHLGPHC YSSSLDKVVQ LLLCDLLLLI RTNVWRLQQQ1020
 1021 GTKQPGTSCP SGIHQASPSE LQGFQQDLSS LRKLAHSFRP AVRRVSRMRR DMLLFLHEAT1080
 1081 ARLMAGASPT RTHQLLDRSL RRRATPGAKT DECEMRPGQR EQAEAVMLAC RYLPPSFLSA1140
 1141 PGQRVGMLAD AARTLEKLGD KRTLHDCQQM IIKLGSGTTV TNS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle