YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47214541
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	33	0.90
Non-Cytoplasmic	34	60	0.95
Transmembrane Helix	61	79	0.90
Cytoplasmic	80	86	0.69
Transmembrane Helix	87	108	0.86
Non-Cytoplasmic	109	122	0.82
Transmembrane Helix	123	142	0.91
Cytoplasmic	143	151	0.74
Transmembrane Helix	152	173	0.85
Non-Cytoplasmic	174	186	0.75
Transmembrane Helix	187	206	0.93
Cytoplasmic	207	219	0.89
Transmembrane Helix	220	239	0.90
Non-Cytoplasmic	240	256	0.87
Transmembrane Helix	257	277	0.74
Cytoplasmic	278	285	0.67
Transmembrane Helix	286	303	0.76
Non-Cytoplasmic	304	309	0.60
Transmembrane Helix	310	331	0.88
Cytoplasmic	332	348	0.84
Transmembrane Helix	349	369	0.88
Non-Cytoplasmic	370	398	0.85
Transmembrane Helix	399	420	0.91
Cytoplasmic	421	695	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVSTSMRL KLPVVCFILE IILIILFGAL VQYDYETDAK EWHNQSHNDY ENDFYFRYPS  60
   61 FQDVHVMIFI GFGFLMTFLQ KYGFGSVGFN FLIAAFSLQW ATLMQGFFHG MHGGKIHVGV 120
  121 ESMINADFCT GSVLISFGAV LGKTSPIQLL TMAMFEVTLF AVNEFILLSL LGIPTDLLLQ 180
  181 TRDAGGSMTI HTFGAYFGLM VTRILYRPHL DKSKHRNSSV YHSDLFAMIG TIYLWMFWPS 240
  241 FNSAITAHGD DQHRTALNTY YSLAACTLAT YGMSAVTSHD GKLDMVHIQN AALAGGVAVG 300
  301 TAGEMMLTPF GSMIVGFLAG IISVLGFKFL SPILESKLKI QDTCGVHNLH GMPGVLGAIV 360
  361 GAVTAALATM DVYGKGMEDV FPAVADGSID ASKQGGVQAL SLAITLGIAL LGGLIVGFIL 420
  421 KLPVFGTPPD TLCFEDGVYW EVPESEAPHE AQLTTVRTEE TEKLSTALPG LVAVPLRERV 480
  481 LQPFPRKDQS GSAALLNIQT EDGNDTAGGG GARGLCILIR RLRVKANQAC PPDDTLGQIW 540
  541 DYFLRRSPTV AQGYWQGALP LPAMARRQRV GMSSSGCSHS ENKSGVINQL QASERGGEGP 600
  601 GGQRRPAASG PPSRPDVGRP GVFEVCTRFP HKLLFIPPPL HRLNLSSWAN LSRSFSPPIV 660
  661 ASSRPLLIVP RPAVLSPARA LCGSCPSISA LGSGF