YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_CUPPJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIALALKAV ILGIVEGLTE FLPISSTGHL ILAGQLLDFN DEKGKIFEIV IQFGAILAVC  60
   61 WEFRRRIANV LSGLTTDPKA QRFAINVIVA TVPAIVLALV FGKWIKAHLF NPITVALAFI 120
  121 IGGVVILLAE RRDARRGMVT NPRGNALLQA AKAGAPRIES VDDLNWRDAL KVGLAQCFAL 180
  181 VPGTSRSGAT IIGGMLFGLS RQVATEFSFF LAIPVIFGAT VYELYKARAL LSVDDLGIFG 240
  241 IGFVFAFLSA FLCVRWLLRF VATHDFKPFA WYRIAFGIIV LATAYSGLIA WHA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	33	0.77
Non-Cytoplasmic	34	43	0.85
Transmembrane Helix	44	63	0.85
Cytoplasmic	64	82	0.92
Transmembrane Helix	83	102	0.96
Non-Cytoplasmic	103	108	0.77
Transmembrane Helix	109	129	0.94
Cytoplasmic	130	202	0.89
Transmembrane Helix	203	225	0.79
Non-Cytoplasmic	226	235	0.75
Transmembrane Helix	236	258	0.92
Cytoplasmic	259	268	0.78
Transmembrane Helix	269	291	0.92
Non-Cytoplasmic	292	293	0.73