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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73540632, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKPASEGA AAAEVPSPAA APASPAAGAS LADFLSTVEI LSALTREELE QLAAAAQTQT  60
   61 FGFGDTVCNA GEPAPGLYII KAGSVRVFNE EHGKEISMGV RKTGEVFADV GLLRDYHHES 120
  121 SVRASGKTEL LMIPRSVGEK VVARNQAALA FITSYVAISS AGGFVARLFD LRGKLDRREL 180
  181 EDAVRSVGVK RVAAGKEILK QDGRDDRRLY VVRQGAVRIV RNEDDDEFPL ATLGQGDIFG 240
  241 ERACVMRQEQ IASAIAETDV RLLVIPEKTV QLILERNPRL REVLEERIRV VDRELHRQKK 300
  301 LAERRKRPVL LDLQSKPELG ERLIRRFALV EQAEEMDCGA ACLAMICRHY GIPMSLGKLR 360
  361 ELANVTTQGA TLESLARAGE SLGFTTRGVQ CTRESLMGFE LPFIVHWEGY HYVIVYGVSA 420
  421 RWVWVADPGI GFRKMSAEEF ERGWSGTCLL FSPGESMAQL SVQRSPWLRF ISYLAPYKKI 480
  481 LAHLFLATFV IQVLGVVPPL IIQNILDGVV VHQNIGLLHL LIVGLIIANL FSQLMSTIRA 540
  541 YLANFMVRNM DFAMMSHFFK HTLSLPLSFF AKRKTGDIFA RFQENQTIRA FLTESTVTTA 600
  601 LNLLMVFIYF TIMFLYNVKL TLLLIAFVIP IAALTVVVTP KVKTYAREVF AASTDAKAYL 660
  661 METLGGAETV KGMGIERPVR LRWEAKYAKA LEKQYQAQAF HILVGMISQL LNAATTIAVL 720
  721 WVGATLVLQR ELTIGQLIAF NAFMGSVLAP LMGLVALWGQ LNDAGVAMER LGDVLDLEPE 780
  781 QKPQDVMSRV LLPDLQGEIE MNGLYFRYGG EDTAYVLENI SLHIKPGEMV AIVGRSGSGK 840
  841 TTLAKLLVGF YRPTEGSMKV DGYEIGMIDT EFYRAQVGYV MQTNLLFSGT IAENIACGDE 900
  901 SPDRRRIEEV ARMADAHPFI TKLPLGYEQI VGERGMGLSG GQIQRLCIAR ALYHDPRLLV 960
  961 FDEATSALDT QSESNILANM QEILRGRTAV IIAHRLSTIM QADKILVLYE GAVVEQGRHD1020
 1021 ELLDRKGMYY QLVQKQLSSA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle