YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73540804, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSLIQTFA VYALPVLFAI TLHEASHGYV AKHFGDTTAY ALGRVSLNPA RHIDPIGTIA  60
   61 VPLLLYLLTS GQFVFGYAKP VPVDFGRLRN PRWHGMWVAL AGPVSNIVQA FLWALIAIGL 120
  121 AWARVSEPFF SEMARAGVLV NLVVAAFNLF PIPPLDGGRV LTALLPPRVA YSVSRIEPYG 180
  181 IFVVLALVAA GVITSVWMRP VINLLSSVVE LMLRPIIMLL Q

Type	Start	End	Confidence
Cytoplasmic	1	55	0.45
Transmembrane Helix	56	76	0.86
Non-Cytoplasmic	77	95	0.49
Transmembrane Helix	96	123	0.80
Cytoplasmic	124	132	0.47
Transmembrane Helix	133	155	0.80
Non-Cytoplasmic	156	177	0.51
Transmembrane Helix	178	201	0.85
Cytoplasmic	202	221	0.50